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Clearance of intracranial debris by ultrasound reduces inflammation and improves outcomes in hemorrhagic stroke models

Matine M. Azadian, Sepideh Kiani Shabestari, Arjun Rajan, Payton J. Martinez, Nicholas Macedo, Eric Markarian, Yun Xiang, Brenda J. Yu, Paul M. George, Ryann M. Fame, Raag D. Airan

Nature Biotechnology 2026 · 10.1038/s41587-025-02866-8

rodentstrokehistology molecularbehaviourother

Abstract

Impaired clearance of neurotoxic debris in the brain exacerbates neurologic disease and presents a promising therapeutic target. Pharmacologic therapies can enhance meningeal lymphatic clearance in preclinical models but may be limited by systemic toxicities or invasive administration. Here we report a low-intensity, focused ultrasound protocol that noninvasively clears pathogenic substances from the cerebrospinal fluid and brain interstitium in mice. Using two models of hemorrhagic stroke, we demonstrate that this protocol clears the cerebrospinal fluid and interstitium of blood cells, which accumulate in the deep cervical lymph nodes via meningeal lymphatics. The protocol directly modulates molecular processes, including mechanosensitive channels, to shift microglial phenotypes and astrocytic aquaporin localization to reduce neuroinflammation and neurocytotoxicity. In the intracerebral hemorrhage model, it improves behavioral outcomes and increases survival with greater efficacy than a pharmacologic benchmark. The protocol satisfies Food and Drug Administration safety guidelines, supporting clinical translatability. If demonstrated effective clinically, it may provide therapeutic benefit not only in hemorrhagic stroke but also in other neurologic disorders that involve impaired debris clearance.

Abstract via europepmc.

Speciesmouse (C57BL/6NCrl)
Subjectsnot reported animals
Sessions per subject3
Randomisedyes
Blindingnot reported
Sham / controlinactive transducer
Auditory controlnot reported
Readout timingoffline
Anaesthesiaanaesthetised
Readoutshistology molecular, behaviour, other — red blood cell counts in CSF and deep cervical lymph nodes; immunohistochemistry (IBA1, GFAP, Fluoro-Jade C, CD68, GAL-3, P2RY12, AQP4); spatial transcriptomics; corner turn test; grip strength; brain water content; survival
Direction of effectnot assessedUltrasound debris clearance (UDC) increased red blood cell clearance to deep cervical lymph nodes, reduced neuroinflammation markers and neuronal degeneration, and improved behaviour and survival after intracerebral hemorrhage; neuronal excitation or inhibition was not assessed.
Adverse eventsnot reportedIntracranial temperature measured with a thermocouple (peak change -0.5 +/- 0.2 C); k-Wave simulation indicated no substantive parenchymal heating; protocol stated to satisfy FDA guidelines (MI 0.9).

Exposures

Exposure 1: UDC 250 kHz pulsed FUS, whole brain, SAH and ICH mouse models

Target: whole brain or unfocused — “applied transcranially throughout the brain”
Device: not reported

Pulse timing
Waveformpulsed
Fundamental frequency (kHz)250✓✓✓
Pulse duration (ms)50✓✓✓
Pulse repetition frequency (Hz)5✓✓✓⚑
Duty cycle (%)25pulse duration × PRF gives 25%✓✓✓
Sonication duration (s)600✓✓✓⚑
Pressure and intensity, by domain
Free-field pressure (kPa)not reported
Free-field Isppa (W/cm²)not reported
Free-field Ispta (W/cm²)not reported
In-situ estimatesimulationsingle value
In-situ pressure (kPa)450✓✓✓
In-situ Isppa (W/cm²)not reported
In-situ Ispta (W/cm²)not reported
Protocol, in the paper’s words

Pulsed protocol, 50-ms pulse width, 250 ms pulse cycle time, 10 min per session, three sessions 24-48 h apart; sham was ultrasound power off. An earlier 650 kHz continuous protocol is mentioned only as prior work.

Flags from extraction

  • exposures[0].in_situ.method — Pressure is called 'peak in situ negative pressure' and 'estimated'; k-Wave simulation of the skull profile is shown but the paper does not say whether the 0.45 MPa value was simulated, derated or measured.
  • exposures[0].timing.pulse_repetition_frequency_hz — PRF of 5 Hz stated only in an Extended Data figure legend; main text gives 250 ms pulse cycle time.
  • n_sessions_per_subject — Three sessions stated only in a figure panel text for the SAH/ICH experiments.
  • n_subjects — Group sizes vary by experiment (n=4, 6, 8 and others); no total stated.
  • exposures[0].device.family — Transducer maker not named (250 kHz, 70- or 100-mm aperture, f=1.0).
  • exposures[0].timing.sonication_duration_s — 10 min per session converted to 600 s.